​2021

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• Tiwari R,  Mishra, AR , Gupta A,   Nayak D. 2021. Structural similarity-based prediction of host factors associated with SARS-CoV-2 infection and pathogenesis. J Biomol Struct Dyn. Jan 28;1-12. DOI: 10.1080/07391102.2021.1874532.

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• Kumar R,   Mehta D,   Mishra N,  Nayak D,  Sunil S. 2021 Role of Host-Mediated Post-Translational Modifications (PTMs) in RNA Virus Pathogenesis J Int. J. Mol. Sci. 2021, 22(1), 323; https://doi.org/10.3390/ijms22010323

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• Effect of Doxorubicin on the Near-Infrared Optical Properties of Indocyanine Green S Jaiswal, SB Dutta, D Nayak, S Gupta ACS omega 6 (50), 34842-34849.

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• Recombination Drives Emergence of Orf Virus Diversity: Evidence From the First Complete Genome of Indian Orf Virus and Comparative Genomic Analysis D Nayak, B Sahu, P Majee, R Singh, N Sahoo.

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• Chikungunya virus non-structural protein nsP3 interacts with Aedes aegypti DEAD-box helicase RM62F R Kumar, P Srivastava, K Mathur, J Shrinet, SK Dubey, M Chinnappan, Inderjeet Kaur, Debasis Nayak, Soma Chattopadhyay, Raj K Bhatnagar, Sujatha Sunil VirusDisease 32 (4), 657-665.

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• Non-invasive photoacoustic screening of blood vasculature during anti-angiogenesis using CAM assay S Khan, P Pathak, S Vasudevan, D Nayak OSA Continuum 4 (11), 2821-2836.

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• SILAC-based quantitative MS approach reveals Withaferin A regulated proteins in prostate cancer R Kumar, D Nayak, SP Somasekharan Journal of Proteomics 247, 104334.

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• A Biocompatible, pH-Sensitive, and Magnetically Separable Superparamagnetic Hydrogel Nanocomposite as an Efficient Platform for the Removal of Cationic Dyes in Wastewater Treatment R Singh, V Munya, VN Are, D Nayak, S Chattopadhyay ACS omega 6 (36), 23139-23154 52021.

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• Optical-Property-Enhancing Novel Near-Infrared Active Niosome Nanoformulation for Deep-Tissue Bioimaging S Bishnoi, S Rehman, SB Dutta, SK De, A Chakraborty, D Nayak, S Gupta ACS omega 6 (35), 22616-22624.

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• Retinoic Acid Inducible Gene-I like Receptors Activate Snail to Limit RNA Viral Infections KHH Dhiviya Vedagiri 1 2, Divya Gupta 1, Anurag Mishra 3, Gayathri Krishna 4,Meenakshi Bhaskar 5, Vishal Sah 1 2, Anirban Basu 5, Debasis Nayak 3, Manjula Kalia 6, Mohanan Valiya Veettil 4Journal of virology.

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• Immunoinformatics Approach to Design Multi-Epitope-Subunit Vaccine against Bovine Ephemeral Fever Disease S Pyasi, V Sharma, K Dipti, NA Jonniya, D Nayak Vaccines 9 (8), 925

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• The animal-human interface and infectious viral diseases: genomics and molecular epidemiological approaches in “one health” context BP Sahu Department of Biosciences and Biomedical Engineering, IIT Indore.

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• Finding potential inhibitors against RNA-dependent RNA polymerase (RdRp) of bovine ephemeral fever virus (BEFV): an in-silico study S Pyasi, NA Jonniya, MF Sk, D Nayak, P Kar Journal of Biomolecular Structure and Dynamics, 1-19.

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• Fusogenic Viral Protein-Based Near-Infrared Active Nanocarriers for Biomedical Imaging S Bishnoi, A Kumari, S Rehman, A Minz, S Senapati, D Nayak, S Gupta ACS Biomaterials Science & Engineering 7 (7), 3351-3360

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• Structural and electrochemical kinetics of Na–Fe–Mn–O thin-film cathode: a synergistic effect of deposition conditions D Nayak, S Ghosh, A Venimadhav Ionics 27 (6), 2421-2430.

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• Inhibition of Zika virus replication by G-quadruplex-binding ligands P Majee, A Pattnaik, BR Sahoo, U Shankar, AK Pattnaik, A Kumar, Debasis Nayak Molecular Therapy-Nucleic Acids 23, 691-701 202021.

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• Bioengineered ethosomes encapsulating AgNPs and Tasar silk sericin proteins for non melanoma skin carcinoma (NMSC) as an alternative therapeutics D Nayak, NC Thathapudi, S Ashe, B Nayak International Journal of Pharmaceutics 596, 120265.

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• Isolation, in-vitro cultureand characterization of primordial germ cells of Kadaknath breed of chicken A Naim, S Dash, SK Mishra, D Nayak Indian Poultry Science Association 56 (1), 9-13.

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• Immunoinformatics Approach to Design Multi-Epitope-Subunit Vaccine against Bovine Ephemeral Fever Disease. Vaccines 2021, 9, 925 S Pyasi, V Sharma, K Dipti, NA Jonniya, D Nayak.

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• Primordial Germ Cell mediated Inter-species germline chimerism: a promising technology for re-population and de-extinction of rare and endangered avian species A Naim, S Mishra, D Nayak Academia Letters, 2.

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• Complete genome sequencing and assessment of mutation-associated protein dynamics of the first Indian bovine ephemeral fever virus (BEFV) isolate S Pyasi, A Gupta, NR Hegde, D Nayak Veterinary Quarterly 41 (1), 308-319.

 

2020

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• Tiwari, R., Mishra, A., Mikaeloff, F., Gupta, S., Mirazimi, A., Byrareddy, S., Ujjwal, N., and Nayak, D 2020. In silico and In vitro Studies Reveal Complement System Drives Coagulation Cascade in SARS-CoV-2 Pathogenesis. Comp Str Bio J. https://doi.org/10.1016/j.csbj.2020.11.005.

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• Roy, R., Mishra, A., Poddar, S., Nayak, D. and Kar, P. 2020.  Investigating the mechanism ofrecognition and structural dynamics of nucleoprotein-RNA complex from Peste des petits ruminants virus via Gaussian accelerated molecular dynamics simulations. J Biomol Struct Dyn. DOI: 10.1080/07391102.2020.1838327

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• Sahu BP, Majee P, Sing RR, Dash M, Biswal S, Sahoo A,  and Nayak D. 2020. Comparative analyses, distribution, and characterization of microsatellites in Orf virus genome. In Press: Scientific Reports. 

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• Mishra, A.R., Byrareddy, S.N., Nayak, D., 2020. IFN-I Independent Antiviral Immune Response to Vesicular Stomatitis Virus Challenge in Mouse Brain. Vaccines 8, 326. https://doi.org/10.3390/vaccines8020326.

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• Moseman, E.A., Blanchard, A.C., Nayak, D., McGavern, D.B., 2020. T cell engagement of cross-presenting microglia protects the brain from a nasal virus infection. Sci. Immunol. 5. https://doi.org/10.1126/SCIIMMUNOL.ABB1817 

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• Saini, B., Singh, R.R., Nayak, D., Mukherjee, T.K., 2020. Biocompatible pH-Responsive Luminescent Coacervate Nanodroplets from Carbon Dots and Poly(diallyldimethylammonium chloride) Toward Theranostic Applications. ACS Appl. Nano Mater. acsanm.0c00995. https://doi.org/10.1021/acsanm.0c00995

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• Naim, A., Mishra, S.K., and Nayak, D. 2020. Bio banking of indigenous chicken germplasm by cryo-preservation of germline potent early embryonic cells and gonadal tissues. Indian Journal of Poultry Science 55 (1), 1-9

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• Majee, P., Shankar, U., Pasadi, S., Muniyappa, K., Nayak, D., Kumar, A., 2020. Genome-wide analysis reveals a regulatory role for G-quadruplexes during Adenovirus multiplication. Virus Res. 283, 197960. https://doi.org/10.1016/ J.VIRUS RES.2020.197960

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• Pyasi, S., Sahu, B.P., Sahoo, P., Dubey, P.K., Sahoo, N., Byrareddy, S.N., Nayak, D., 2020. Identification and phylogenetic characterization of bovine ephemeral fever virus (BEFV) of Middle Eastern lineage associated with 2018‐2019 outbreaks in India. Transbound. Emerg. Dis. tbed.13531. https://doi.org/10.1111/tbed.13531

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• Panigrahi A, Are VN, Jain S, Nayak D, Giri S, Sarma TK. 2020. Cationic Organic Nanoaggregates as AIE Luminogens for Wash-Free Imaging of Bacteria and Broad-Spectrum Antimicrobial Application. ACS Appl Mater Interfaces. 2020 Jan 27. doi: 10.1021/acsami.9b15629.

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• Majee P, Mishra SK, Pandya N, Shankar U, Prasadi S, Muniyappa K, Nayak D and Kumar A. 2020. Identification and characterization of two conserved G-quadruplex forming motifs in the Nipah virus genome and their interaction with G-quadruplex specific ligands.Sci Rep 10, 1477 (2020). https://doi.org/10.1038/s41598-020-58406-8

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• Mishra AR, Rath PK, P SK, and Nayak D. 2020. Influence of mutation in nucleoprotein of Peste-des-petits-ruminants virus (PPRV) isolated from 2016 Indian outbreak. Smal Rumin Res. 2020. Jan. https://doi.org/10.1016/j.smallrumres.2020.106048.

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​2019

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• Sahu BP, Majee P, Mishra C, Dash M, Biswal S, Sahoo N,  and Nayak D. 2019. The emergence of subclade A1 and A3 Avipoxviruses in India. Transbound Emerg Dis. 2019 Nov 6. doi: 10.1111/tbed.13413. 

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• Tiwari R., de la Torre, J.C., McGavern, D.B and Nayak D. 2019. Beyond Tethering the Viral Particles: Immunomodulatory Functions of Tetherin (BST-2). DNA Cell Biol. 2019.

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• Sahoo B., Majee, P., Sahoo A., and Nayak D. 2019. Molecular characterization, comparative and evolutionary analysis of the recent Orf outbreaks among goats in the Eastern part of India (Odisha). Agri Gene. 12. 100088

 

• Giri S, Madani S, Sahu, BP, Nayak D and Sarma T. 2019. AIE active fluorescent organic nanoaggregates for selective detection of phenolic-nitroaromatic explosives and cell imaging. J. Photo Chem and Photo Bio-A, 374, 194-205

 

• Kundu, B. K., Mandal, P., Mukhopadhyay, B. G., Tiwari, R., Nayak, D., Ganguly, R., & Mukhopadhyay, S. 2019. Substituent dependent sensing behavior of Schiff base chemosensors in detecting Zn2+and Al3+ ions: Drug sample analysis and living cell imaging. Sensors and Actuators, B: Chemical 282, 347-358​

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​2018

• Adhikari C, Mishra A, Nayak D, and Chakraborty A. 2018. Metal organic frameworks modified mesoporous silica nanoparticles (MSN): A nano-composite system to inhibit uncontrolled chemotherapeutic drug delivery from Bare-MSN. Journal of Drug Delivery Science and Technology. 47: 1-11.

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• Urata S, Kenyon E, Nayak D, Cubitt E, Kurosaki Y, Yasuda J, Juan C, McGavern DB. 2018. BST-2 controls T cell proliferation and exhaustion by shaping the early distribution of a persistent viral infection. PLOS Pathogens 14 (7), e1007172

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• Adhikari C, Mishra A, Nayak D, and Chakraborty A. 2018. Drug delivery system composed of mesoporous silica and hollow mesoporous silica nanospheres for chemotherapeutic drug delivery. Journal of Drug Delivery Science and Technology. 45 (2018) 303–314.

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• Thakur N, Sharma B, Bishnoi S, Mishra S, Nayak D, Kumar A, Sarma TK. 2018. Multifunctional Inosine Monophosphate Coordinated Metal-Organic Hydrogel: Multi-stimuli Responsiveness, Self-healing Properties and Separation of Water from Organic Solvents. ACS Sustainable Chem. Eng., 2018, 6 (7), pp 8659–8671.

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•  Bishnoi S,  Tiwari R., Gupta S, Byrareddy SN and Nayak D. 2018. Oncotargeting by Vesicular Stomatitis Virus (VSV): Advances in Cancer Therapy. Viruses 2018, 10(2), 90.

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• Das M, Kumar Kundu B, Tiwari R, Mandal P, Nayak D, Ganguly R, Mukhopadhyay S. 2018. Investigation on chemical protease, nuclease and catecholase activity of two copper complexes with flexidentate Schiff base ligands. Inorganica Chim Acta 469:111–122.

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​2017

• Mandani S, Majee P, Sharma B, Sarma D, Thakur N, Nayak D, Sarma TK. 2017. Carbon Dots as Nanodispersants for Multiwalled Carbon Nanotubes: Reduced Cytotoxicity and Metal Nanoparticle Functionalization. Langmuir 33:7622–7632.

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​2016

• Swanson PA, Hart GT, Russo M V., Nayak D, Yazew T, Peña M, Khan SM, Janse CJ, Pierce SK, McGavern DB. 2016. CD8+T Cells Induce Fatal Brainstem Pathology during Cerebral Malaria via Luminal Antigen-Specific Engagement of Brain Vasculature. PLoS Pathog 12:1–24.

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• Das A, Adhikari C, Nayak D, Chakraborty A. 2016. First Evidence of the Liposome-Mediated Deintercalation of Anticancer Drug Doxorubicin from the Drug-DNA Complex: A Spectroscopic Approach. Langmuir 32:159–170.

 

​2015

• Navarathna DHMLP, Stein E V., Lessey-Morillon EC, Nayak D, Martin-Manso G, Roberts DD. 2015. CD47 promotes protective innate and adaptive immunity in a mouse model of disseminated candidiasis. PLoS One 10:1–24.

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​2014

• Nayak D, Roth TL, Mcgavern DB. 2014. Microglia Development and Function. Annu. Rev. Immunol.32:367–402

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• Gossa S, Nayak D, Zinselmeyer BH, McGavern DB. 2014. Development of an immunologically tolerated combination of fluorescent proteins for in vivo two-photon imaging. Sci Rep 4:6664.

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​2013

• Zinselmeyer BH, Heydari S, Sacristán C, Nayak D, Cammer M, Herz J, Cheng X, Davis SJ, Dustin ML, McGavern DB. 2013. PD-1 promotes immune exhaustion by inducing antiviral T cell motility paralysis. J Exp Med 210:757–774.

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• Nayak D, Johnson KR, Heydari S, Roth TL, Zinselmeyer BH, McGavern DB. 2013. Type I interferon programs innate myeloid dynamics and gene expression in the virally infected nervous system. PLoS Pathog 9:e1003395.

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• Navarathna DHMLP, Munasinghe J, Lizak MJ, Nayak D, Mcgavern DB, Roberts DD. 2013. MRI confirms loss of blood-brain barrier integrity in a mouse model of disseminated candidiasis. NMR Biomed 26:1125–1134

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• Roth TL, Nayak D, Atanasijevic T, Koretsky AP, Latour LL, McGavern DB. 2013. Transcranial amelioration of inflammation and cell death after brain injury. Nature 505:223–228.

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​2012

• Nayak D, Zinselmeyer BH, Corps KN, McGavern DB. 2012. In vivo dynamics of innate immune sentinels in the CNS. Intravital 1:95–106.

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2011

• Kang SS, Herz J, Kim J V, Nayak D, Stewart-Hutchinson P, Dustin ML, McGavern DB. 2011. Migration of cytotoxic lymphocytes in cell cycle permits local MHC I-dependent control of division at sites of viral infection. J Exp Med 208:747–759.

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• Panda D, Das A, Dinh PX, Subramaniam S, Nayak D, Barrows NJ, Pearson JL, Thompson J, Kelly DL, Ladunga I, Pattnaik AK. 2011. RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses. Proc Natl Acad Sci U S A 108:19036–41.

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2009

• Nayak D, Panda D, Das SC, Luo M, Pattnaik AK. 2009. Single-Amino-Acid Alterations in a Highly Conserved Central Region of Vesicular Stomatitis Virus N Protein Differentially Affect the Viral Nucleocapsid Template Functions. J Virol 83:5525–5534.

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• Das SC, Panda D, Nayak D, Pattnaik AK. 2009. Biarsenical labeling of vesicular stomatitis virus encoding tetracysteine-tagged m protein allows dynamic imaging of m protein and virus uncoating in infected cells. J Virol 83:2611–2622.

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2008

• Das SC, Nayak D, Zhou Y, Pattnaik AK. 2006. Visualization of intracellular transport of vesicular stomatitis virus nucleocapsids in living cells. J Virol 80:6368–77.